tag:blogger.com,1999:blog-6334453475526523597.post4399648006502554359..comments2023-11-07T10:31:25.370+00:00Comments on CoreGenomics: How much does NGS cost: a logical puzzleJames@cancerhttp://www.blogger.com/profile/02825715598810395734noreply@blogger.comBlogger8125tag:blogger.com,1999:blog-6334453475526523597.post-89600683040481884402013-12-11T19:04:36.148+00:002013-12-11T19:04:36.148+00:00fun game!
yellow=Seq, red = Prep
1- genome
2 - exo...fun game!<br />yellow=Seq, red = Prep<br />1- genome<br />2 - exome<br />3- amplicons<br />4- RNA seq<br />5- CHIP seq<br />6 - methylome<br />?crumptorhttps://www.blogger.com/profile/09253133995114018184noreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-58504953852995754522013-12-11T13:40:17.084+00:002013-12-11T13:40:17.084+00:00This is our logic guess as analysis guys not knowi...This is our logic guess as analysis guys not knowing the current prices nor if the cost is per sample, per depth or per lane.<br /><br />Library prep = Red<br />Sequencing = Orange (assuming constant cost for sequencing a whole lane with one individual)<br /><br />1: RNAseq<br />2: Exome<br />3: Amplicon<br />4: Genome<br />5: ChIPseq<br />6: Methylome<br /><br />Or probably something totally different...<br /><br />Not sure about exome/ChIPseq.<br /><br />By the way, it would be really cool if you could add a blue circle with bioinformatics analysis cost.ugdghttp://pablomarin-garcia.blogspot.com.es/noreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-27084115861753142072013-12-09T15:48:41.129+00:002013-12-09T15:48:41.129+00:00Library prep = Red
Sequencing = Orange
1 = Genome
...Library prep = Red<br />Sequencing = Orange<br />1 = Genome<br />2 = RNAseq<br />3 = Amplicon<br />4 = Exome<br />5 = Methylome<br />6 = ChIPseqAnonymousnoreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-11795130249187728632013-12-05T17:42:58.604+00:002013-12-05T17:42:58.604+00:00Can you determine which application is which?
1-Ge...Can you determine which application is which?<br />1-Genome<br />2-Exome<br />3-Amplicon Sequencing<br />4-RnaSeq<br />5-Methylome<br />6-ChipSeq<br /><br />Which colour is library prep?<br />Red<br />Which colour is sequencing?<br />Orange<br /><br />How much do you think each application costs?bpinghttps://www.blogger.com/profile/17946245284158073124noreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-492077635534881892013-12-05T14:14:36.619+00:002013-12-05T14:14:36.619+00:00This is a fun game.
In the order of my logic:
#6 ...This is a fun game.<br /><br />In the order of my logic:<br />#6 is Methylome, not presumably RRBS (Reduced Representation Bisulfite) but rather Whole Human, library ~$120, seq ~$5500 (~120GB seq)<br />#5 is Whole Genome (~90GB seq), library ~$100, seq ~$4000<br />#2 is Whole Exome (~5GB seq), library ~$40, seq ~$250<br />#1 is ChIP, 5M tags, library prep ~$110, seq ~$150<br />#4 is Gene Expression RNA-Seq, 3M tags, library prep ~$130, seq $90Dale Yuzukihttp://www.yuzuki.orgnoreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-76471507216108332682013-12-03T13:34:39.867+00:002013-12-03T13:34:39.867+00:00My guess:
orange is sequencing (pricing is similar...My guess:<br />orange is sequencing (pricing is similar for all library prep methods), red is library prep<br /><br />1) genome<br />2) RNA-seq<br />3) exome<br />4) methylome<br />5) CHiP-Seq<br />6) Amplicon<br /><br />My estimation is based on a pricing per lane sequencing.<br /><br />......?Anonymoushttps://www.blogger.com/profile/14220798756055038525noreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-12092961571589060522013-12-02T20:16:28.881+00:002013-12-02T20:16:28.881+00:00My guess:
1) ChIP-Seq
2) RNA-Seq
3) Amplicon
4) E...My guess:<br /><br />1) ChIP-Seq<br />2) RNA-Seq<br />3) Amplicon<br />4) Exomes<br />5) Genome<br />6) Methylome<br /><br />Orange = prep; Red = sequencing<br /><br />Interested in seeing the results! Hope they aren't too far off - I only assist with the bioinformatic analysis!cdwSciencehttps://www.blogger.com/profile/11895261662921346808noreply@blogger.comtag:blogger.com,1999:blog-6334453475526523597.post-721492114864491112013-11-30T13:47:50.747+00:002013-11-30T13:47:50.747+00:00Very nice post. Working on the analysis! :)
Very nice post. Working on the analysis! :)<br />marcelohttps://www.blogger.com/profile/18267380620128844859noreply@blogger.com